Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CRC rs1850177 chr7:57732815 A/C 1.64E-6 374 11.92 20.3 23.37 KM Plot
CRC rs1890039 chr1:146681951 T/C 1.1E-5 373 11.13 26.12 21.9 KM Plot
CRC rs1966281 chr12:59967137 T/C 1.04E-5 374 10.4 18.13 24.77 KM Plot
CRC rs200025624 chr5:54626490 GT/G 5.62E-5 368 22.37 22.43 9.67 KM Plot
CRC rs200555103 chr7:62008159 C/T 5.98E-12 365 23.1 20.23 10.22 KM Plot
CRC rs200930856 chr7:57782227 CTCTG/C 3.53E-5 365 23.37 22.3 12.57 KM Plot
CRC rs200962925 chr7:62028443 C/T 5.32E-12 366 23.37 20.23 10.22 KM Plot
CRC rs201218990 chr7:62015207 G/A 8.09E-7 366 23.6 20.23 11.27 KM Plot
CRC rs201397080 chr7:57764282 AAATAGC/A 1.64E-6 374 23.37 20.3 11.92 KM Plot
CRC rs201486018 chr7:61980755 A/G 7.19E-7 367 22.83 20.3 11.27 KM Plot
CRC rs202174413 chr7:61097443 T/G 9.9E-7 368 24.47 20.27 10.27 KM Plot
CRC rs2053246 chr3:97300717 C/T 1.12E-6 374 24.47 20.3 11.53 KM Plot
CRC rs2061242 chr5:54645411 G/A 6.03E-5 373 22.32 23.43 9.67 KM Plot
CRC rs2081153 chr5:40871405 G/A 3.92E-5 373 22.35 22.07 26.1 KM Plot
CRC rs2085398 chr5:54644759 T/C 5.17E-5 373 22.32 23.43 9.67 KM Plot